scTCRseq specifications

Information


Unique identifier OMICS_12346
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data Paired-end single-cell RNA-seq data
Operating system Unix/Linux
Programming languages Python
License GNU Affero General Public License version 3
Computer skills Advanced
Stability Stable
Requirements SEQTK, Blastall, GapFiller, Vidjil
Maintained Yes

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Documentation


Maintainer


  • person_outline David Redmond <>

scTCRseq citation

2016
PMCID: 4962388

[…] and mif (a key regulator in innate immunity) [43].fig. 2, quality control was performed (“methods” and additional file 1: table s1) and 71 samples were subsequently selected for processing in sctcrseq (with blast evalue threshold 1e-8, minimum supporting read coverage 5, and estimated mean insert size of 175). the reads were mapped in blast using the custom mice variable and constant gene […]

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