scTDA specifications


Unique identifier OMICS_18186
Name scTDA
Alternative name single-cell Topological Data Analysis
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Python
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Maintained Yes



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  • person_outline Raul Rabadan <>
  • person_outline Tom Maniatis <>

Publication for single-cell Topological Data Analysis

scTDA institution(s)
Department of Biochemistry and Molecular Biophysics, Columbia University Medical Center, NY, USA; The Mortimer B. Zuckerman Mind Brain Behavior Institute, Columbia University, NY, USA; Department of Systems Biology, Columbia University Medical Center, NY, USA; Department of Biomedical Informatics, Columbia University Medical Center, NY, USA; Howard Hughes Medical Institute, Columbia University Medical Center, NY, USA
scTDA funding source(s)
Supported by the NIH grants U54-CA193313-01 and R01GM117591, and by ALS Therapy Alliance grant ATA-2013-F-056 and NIH grant NS088992.

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