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scvis specifications


Unique identifier OMICS_20749
Name scvis
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Stability Stable
Maintained Yes


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Publication for scvis

scvis citations


Opportunities and obstacles for deep learning in biology and medicine

PMCID: 5938574
PMID: 29618526
DOI: 10.1098/rsif.2017.0387

[…] their data were relatively low dimensional., neural networks can also learn low-dimensional representations of single-cell gene expression data for visualization, clustering and other tasks. both scvis [] and scvi [] are unsupervised approaches based on vaes. whereas scvis primarily focuses on single-cell visualization as a replacement for t-distributed stochastic neighbour embedding [], […]


Use of a Single Hybrid Imaging Agent for Integration of Target Validation with In Vivo and Ex Vivo Imaging of Mouse Tumor Lesions Resembling Human DCIS

PLoS One
PMCID: 3543428
PMID: 23326303
DOI: 10.1371/journal.pone.0048324

[…] bioscan) 24 hours post injection. after acquisition, the ct data was reconstructed using a cone-beam filtered back projection and spect data were reconstructed iteratively with hispect software (scvis gmbh). signal intensities were analyzed using the invivoscope post-processing software (bioscan inc.). for further details, see van leeuwen et al. . after spect/ct imaging, mice […]

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scvis institution(s)
Department of Computer Science, University of British Columbia, Vancouver, BC, Canada; Department of Molecular Oncology, BC Cancer Agency, Vancouver, BC, Canada; Department of Pathology and Laboratory Medicine, University of British Columbia, Vancouver, BC, Canada
scvis funding source(s)
Supported by a Discovery Frontiers project grant, “The Cancer Genome Collaboratory”, jointly sponsored by the Natural Sciences and Engineering Research Council (NSERC), Genome Canada (GC), the Canadian Institutes of Health Research (CIHR) and the Canada Foundation for Innovation (CFI); the BC Cancer Foundation; the Canadian Breast Cancer Foundation, the Canadian Cancer Society Research Institute (impact grant 701584) the Terry Fox Research Institute (PPG program on forme fruste tumors), CIHR (grant MOP-115170), CIHR Foundation (grant FDN-143246); the Canada Research Chairs.

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