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Protocols

SDAR specifications

Information


Unique identifier OMICS_33339
Name SDAR
Alternative name Serial Data Analysis and Regression
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Output format SVG,PNG,TIFF
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Database management system Oracle
License GNU Affero General Public License version 3, Other
Computer skills Medium
Version 5.1
Stability Stable
Requirements
JRE
Maintained Yes

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Versioning


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Maintainer


  • person_outline Andreas Hofmann

Publication for Serial Data Analysis and Regression

SDAR citations

 (4)
library_books

Enzyme characteristics of pathogen specific trehalose 6 phosphate phosphatases

2017
Sci Rep
PMCID: 5435700
PMID: 28515463
DOI: 10.1038/s41598-017-02220-2

[…] ance data were converted to molar concentration of phosphate using a calibration function that was re-determined for every new batch of BIOMOL® Green. All data fitting was performed with the software SDAR. To model the burst behaviour, the raw kinetics data were fitted with the following equationc(phosphate)=A⋅(1−e−kb⋅t)+vsteadystate⋅t,where A is the burst amplitude, k b the burst rate constant an […]

call_split

Predicted Coverage and Immuno Safety of a Recombinant C Repeat Region Based Streptococcus pyogenes Vaccine Candidate

2016
PLoS One
PMCID: 4911098
PMID: 27310707
DOI: 10.1371/journal.pone.0156639
call_split See protocol

[…] 190 nm in 0–50% 2,2-trifluoroethanol (TFE). All spectra were corrected for buffer baseline and converted to mean residue ellipticity (θ) using the software ACDP v2.9 [] and compared with the software SDAR v2.9 []. The amount of TFE required to observe alpha-helical secondary structure is based on the appearance of a peak at 208 nm. For each peptide, secondary structure was predicted based on its a […]

call_split

SDAR: a practical tool for graphical analysis of two dimensional data

2012
BMC Bioinformatics
PMCID: 3480940
PMID: 22892030
DOI: 10.1186/1471-2105-13-201
call_split See protocol

[…] SDAR is a Java application that builds on and extends fundamental Java classes developed within the Program Collection for Structural Biology and Biophysical Chemistry (PCSB) []. The four PCSB compone […]

call_split

Insights into the Membrane Interactions of the Saposin Like Proteins Na SLP 1 and Ac SLP 1 from Human and Dog Hookworm

2011
PLoS One
PMCID: 3184995
PMID: 21991310
DOI: 10.1371/journal.pone.0025369
call_split See protocol

[…] id surface of 0.5–0.9 nmol cm−2) using a Hamilton syringe extending beneath the barrier, and the surface pressure π was recorded as a function of time. Adsorption data were analysed with the software SDAR from the PCSB program collection . […]

Citations

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SDAR institution(s)
Structural Chemistry Program, Eskitis Institute for Cell and Molecular Therapies, Griffith University, Brisbane, QLD, Australia; Division of Molecular Biosciences, Imperial College London, London, UK; Universite Lyon 1, CNRS ICBMS 5246, Institut de Chimie et Biochimie Moleculaires et Supramolaires, Laboratoire Genie Enzymatique, Membrane Biomimetique et Assemblages Supramoleculaires, Villeurbanne, France; Faculty of Veterinary Science, The University of Melbourne, Parkville, VIC, Australia; Queensland Tropical Health Alliance, Townsville, QLD, Australia

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