SDM-Assist specifications


Unique identifier OMICS_25127
Name SDM-Assist
Interface Command line interface
Restrictions to use Academic or non-commercial use
Operating system Mac OS, Windows
Computer skills Advanced
Stability Stable
Adobe AIR package
Maintained Yes




No version available



  • person_outline Christopher Grefen

Publication for SDM-Assist

SDM-Assist citation


Ubiquitylation dependent regulation of NEIL1 by Mule and TRIM26 is required for the cellular DNA damage response

Nucleic Acids Res
PMCID: 5314803
PMID: 27924031
DOI: 10.1093/nar/gkw959

[…] so recloned using the same approach into pCMV-Tag3a vector for mammalian expression. Site-directed PCR mutagenesis was used to generate site-specific mutants within NEIL1. Primers were designed using SDM-Assist () and also contain ‘silent’ restriction sites for screening of clones. These are listed in the Supplementary Data (Supplementary Table). His-tagged TRIM26 and NEIL1 were overexpressed in R […]

SDM-Assist institution(s)
Department of Computer Science, University of Bristol, Bristol, UK; Molecular, Cell & Systems Biology, University of Glasgow, Glasgow, UK
SDM-Assist funding source(s)
Supported by Microsoft Research through the PhD Scholarship Programme and a BBSRC grant (BB/HO24867/1).

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