SDT pipeline

SDT specifications

Information


Unique identifier OMICS_06325
Name SDT
Alternative name Sequence Demarcation Tool
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Computer skills Advanced
Stability Stable
Maintained Yes

Taxon


  • Viruses

Versioning


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Publication for Sequence Demarcation Tool

SDT citation

2017
PMCID: 5625602

[…] for the location of conserved domains., the percentage differences between the nucleotide sequences of the isolates was done by doing a multiple sequence alignment using muscle in the sequence demarcation tool software version 1.2 [27]., analyses to detect recombination was done using rdp4 software package. alignments and analyses were performed for orf 1 and orf 2 separately. […]

SDT institution(s)
Department of Clinical Laboratory Sciences, University of Cape Town, Cape Town, South Africa

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