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Se-Al specifications


Unique identifier OMICS_28817
Name Se-Al
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Version 2.0a11
Stability Stable
Maintained Yes




No version available

Se-Al citations


First Complete Genome Sequence of an Isolate of Tomato Mottle Mosaic Virus Infecting Plants of Solanum lycopersicum in South America

Genome Announc
PMCID: 5946046
PMID: 29748414
DOI: 10.1128/genomeA.00427-18

[…] ratories, Inc., CA, USA). The complete sequence was compared with those from tobamoviruses retrieved from the GenBank database using the BLAST algorithm (). Sequence alignments were carried out using Se-Al software version 1.0 alpha 1 ().The complete genome sequence of the CpB1 isolate is 6,383 nucleotides (nt) long and consists of four open reading frames (ORFs), annotated according to their iden […]


Spatiotemporal Characteristics and Health Risk Assessment of Heavy Metals in PM2.5 in Zhejiang Province

PMCID: 5923625
PMID: 29587346
DOI: 10.3390/ijerph15040583

[…] , which were consistent with previous studies [,,]. The metal concentrations in PM2.5 varied over sampling sites. As, Pb, Sb, and Tl are dominant in HZ, whereas JH has higher concentrations of Cd and Se. Al, Cr, and Ni are relatively higher in NB, LS, and ZS, respectively. Monthly variations of the 12 element concentrations in PM2.5 are summarized in . Although the metal concentrations in PM2.5 va […]


Phylogeny of Maleae (Rosaceae) Based on Multiple Chloroplast Regions: Implications to Genera Circumscription

Biomed Res Int
PMCID: 5884435
PMID: 29750171
DOI: 10.1155/2018/7627191
call_split See protocol

[…] esulting sequences (Supplementary ) were combined with the published sequences of Maleae species downloaded from GenBank (Supplementary ), aligned with Clustal X [, ], and then manually adjusted with Se-Al 2.0 []. Each individual gene dataset was then subjected to several rounds of phylogenetic evaluations to select reliable sequences. Sequences that were misidentified or exhibited large amounts o […]


Development of Chloroplast Genomic Resources in Chinese Yam (Dioscorea polystachya)

Biomed Res Int
PMCID: 5872661
PMID: 29725599
DOI: 10.1155/2018/6293847

[…] All sequenced D. polystachya chloroplast genomes were aligned using MAFFT v7 [], assuming collinear genomes for the full alignment, and then adjusted manually using Se-Al 2.0 []. Variable and parsimony-informative base sites across the complete chloroplast genomes were calculated using MEGA 6.0 software [].The chloroplast genome sequences were analyzed to identif […]


Hyperendemic dengue transmission and identification of a locally evolved DENV 3 lineage, Papua New Guinea 2007 2010

PLoS Negl Trop Dis
PMCID: 5849365
PMID: 29494580
DOI: 10.1371/journal.pntd.0006254
call_split See protocol

[…] to contigs using CLC Genomics Workbench (Ver. 8.5.1). Complete assembled contigs were checked for chimeras and aligned against publicly available sequences using MACSE []. Alignments were verified in Se-Al 2.0 ( and analyzed using RAxML to generate a maximum-likelihood (ML) tree with ML bootstrap support based on the optimal number of ML bootstrap replicates […]


Differential Immunodominance Hierarchy of CD8+ T Cell Responses in HLA B*27:05 and B*27:02 Mediated Control of HIV 1 Infection

J Virol
PMCID: 5790925
PMID: 29167337
DOI: 10.1128/JVI.01685-17
call_split See protocol

[…] ion sequences. Sequencing was undertaken using the BigDye Ready Reaction Terminator Mix (V3) (Applied Biosystems UK) analyzed using Sequencher v4.8 (Gene Codes Corporation) and manually aligned using Se_Al software. […]


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