SEAL statistics

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Associated diseases

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SEAL specifications

Information


Unique identifier OMICS_00682
Name SEAL
Software type Framework/Library, Toolkit/Suite
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Parallelization MapReduce
License GNU General Public License version 3.0
Computer skills Advanced
Version 0.4
Stability Stable
Requirements
Hadoop, JDK, HadoopBAM, Pydoop, Protobuf, Ant, make, gcc, Junit, ant-junit
High performance computing Yes
Maintained Yes

Subtools


  • Bcl2Qseq
  • Demux
  • PairReadsQSeq
  • ReadSort
  • RecabTable
  • Seqal

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Maintainers


  • person_outline Luca Pireddu <>
  • person_outline Simone Leo <>
  • person_outline Gianluigi Zanetti <>

Publication for SEAL

SEAL in publications

 (27)
PMCID: 5934943
PMID: 29755445
DOI: 10.3389/fmicb.2018.00833

[…] manufacturer’s guidelines. the qiime 2 software package (version 2017.10) was used to process the raw sequence data (). in brief, a total of 150,108 reads were obtained after demultiplexing with q2-demux, with an average sequence length of 250 bp. the quality was filtered, replicated and chimera removed with q2-dada2 (). representative sequence sets for each dada2 sequence variant were used […]

PMCID: 5862444
PMID: 29561873
DOI: 10.1371/journal.pone.0193671

[…] were processed through the open source software pipeline quantitative insights into microbial ecology 2 (qiime 2) version 2017.2 (http://qiime2.org). sequences were demultiplexed using the “demux emp-single” command. quality control was performed using dada2 [] by removing any remaining phix reads, chimeric sequences and low-quality regions of the sequences []. herein, high-quality […]

PMCID: 5852089
PMID: 29540709
DOI: 10.1038/s41598-018-22195-y

[…] n$$\end{document}1×n psc in single wavelength case. in the monitoring system, the return broadening signals are de-multiplexed to i wavelength channels by a wavelength division demultiplexer (demux), followed by i photoelectric detectors (pds). after the photoelectric conversion, the electronic signals are processed by the field programmable gate array (fpga) through sampling […]

PMCID: 5842653
PMID: 29514626
DOI: 10.1186/s12859-018-2086-5

[…] experimentation on a computing cluster, we found that the time a user must spend waiting for informme to process a wgbs experiment (∼ 1 day) is far less than the time it takes to sequence and demux the samples (and much less time than wet lab experiments take to produce the samples). we thus contend that waiting on accurate and comprehensive bioinformatics modeling of methylation data […]

PMCID: 5824880
PMID: 29476048
DOI: 10.1038/s41467-018-03259-z

[…] singlet oxygen generation) are mutually antagonistic, and at least in principle, it should be possible to switch between these two processes. the digital equivalent is that of a demultiplexer (demux) circuit, which takes single data input, and uses n select/address inputs to switch between 2n possible outputs (fig. ).fig. 1, chemical implementation of this idea relies on the photophysics […]


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SEAL institution(s)
CRS4, Polaris, Pula, Italy

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