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Protocols

SEAR specifications

Information


Unique identifier OMICS_19599
Name SEAR
Alternative name Search Engine for Antimicrobial Resistance
Interface Web user interface
Restrictions to use None
Input data Files from metagenomic, metatranscriptomic or isolate sequencing.
Input format FASTQ
Computer skills Basic
Stability Stable
Maintained No

Maintainer


This tool is not maintained anymore.

Information


Unique identifier OMICS_19599
Name SEAR
Alternative name Search Engine for Antimicrobial Resistance
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Perl, R, Shell (Bash)
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Will Rowe <>

Publication for Search Engine for Antimicrobial Resistance

SEAR citation

library_books

Overexpression of antibiotic resistance genes in hospital effluents over time

2017
PMCID: 5437528
PMID: 28175320
DOI: 10.1093/jac/dkx017

[…] args and that the abundance of these args is greater than that of the receiving environment, suggesting that effluents are contributing args to the resistome., metagenomics, combined with the search engine for antimicrobial resistance (sear), allows the resolution of full-length args from environmental samples of unknown composition, thus providing an excellent method for investigating […]


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SEAR institution(s)
Department of Veterinary Medicine, University of Cambridge, Cambridge, UK; Wellcome Trust Sanger Institute, Cambridge, UK; Centre for Environment, Fisheries and Aquaculture Science, Weymouth, UK; Environment, Health and Safety, GlaxoSmithKline, Ware, UK
SEAR funding source(s)
Supported by GlaxoSmithKline, the Centre for Environment, Fisheries and Aquaculture Science and the Biotechnology and Biological Sciences Research Council.

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