SearchGUI pipeline

SearchGUI specifications


Unique identifier OMICS_03352
Name SearchGUI
Software type Package/Module
Interface Command line interface, Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java, Perl
License Apache License version 2.0
Computer skills Advanced
Version 3.3.3
Stability Stable
Maintained Yes



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  • person_outline Marc Vaudel <>

Additional information

Publications for SearchGUI

SearchGUI IN pipeline

PMCID: 5895611
PMID: 29643409
DOI: 10.1038/s41598-018-23552-7

[…] accela hplc. peptide rcap data was generated on a bruker autoflex iii maldi-tof and analyzed using gpmaw (general protein/mass analysis for windows, supplementary figureĀ 4)., database searches used searchgui and the peptide sequences were compiled with peptideshaker34,35. databases were created using hpev1 protein sequences appended to a fasta file containing the uniprot human proteome […]

SearchGUI institution(s)
Proteomics Unit, Department of Biomedicine, University of Bergen, Bergen, Norway; Computational Biology Unit, Department of Informatics, University of Bergen, Bergen, Norway; KG Jebsen Center for Diabetes Research, Department of Clinical Science, University of Bergen, Bergen, Norway; Center for Medical Genetics and Molecular Medicine, Haukeland University Hospital, Bergen, Norway
SearchGUI funding source(s)
Supported by the Research Council of Norway and the Bergen Research Foundation.

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