SearchGUI pipeline
SearchGUI specifications
Information
| Unique identifier | OMICS_03352 |
|---|---|
| Name | SearchGUI |
| Software type | Package/Module |
| Interface | Command line interface, Graphical user interface |
| Restrictions to use | None |
| Operating system | Unix/Linux, Mac OS, Windows |
| Programming languages | Java, Perl |
| License | Apache License version 2.0 |
| Computer skills | Advanced |
| Version | 3.3.3 |
| Stability | Stable |
| Maintained | Yes |
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Documentation
Maintainer
- person_outline Marc Vaudel <>
Additional information
https://github.com/compomics/searchgui/wiki
Publications for SearchGUI
library_books
SearchGUI: A Highly Adaptable Common Interface for Proteomics Search and de Novo Engines.
2018 J Proteome Res
PMID: 29774740
DOI: 10.1021/acs.jproteome.8b00175
library_books
SearchGUI: An open-source graphical user interface for simultaneous OMSSA and X!Tandem searches.
2011 Proteomics
PMID: 21337703
SearchGUI IN pipeline
call_split
Intrinsically-disordered N-termini in human parechovirus 1 capsid proteins bind encapsidated RNA
2018
PMCID: 5895611
PMID: 29643409
DOI: 10.1038/s41598-018-23552-7
[…] accela hplc. peptide rcap data was generated on a bruker autoflex iii maldi-tof and analyzed using gpmaw (general protein/mass analysis for windows, supplementary figure 4)., database searches used searchgui and the peptide sequences were compiled with peptideshaker34,35. databases were created using hpev1 protein sequences appended to a fasta file containing the uniprot human proteome […]
SearchGUI institution(s)
Proteomics Unit, Department of Biomedicine, University of Bergen, Bergen, Norway; Computational Biology Unit, Department of Informatics, University of Bergen, Bergen, Norway; KG Jebsen Center for Diabetes Research, Department of Clinical Science, University of Bergen, Bergen, Norway; Center for Medical Genetics and Molecular Medicine, Haukeland University Hospital, Bergen, Norway
SearchGUI funding source(s)
Supported by the Research Council of Norway and the Bergen Research Foundation.
SearchGUI reviews
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