SearchSmallRNA statistics

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SearchSmallRNA specifications

Information


Unique identifier OMICS_04843
Name SearchSmallRNA
Software type Package/Module
Interface Graphical user interface
Restrictions to use Academic or non-commercial use
Input data RNA reads and reference genome
Input format FASTA
Output data genomic strand
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Medium
Version 1.0
Stability Stable
Requirements
JVM
Maintained No

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Publication for SearchSmallRNA

SearchSmallRNA in publication

PMCID: 5207757
PMID: 28045932
DOI: 10.1371/journal.pone.0168397

[…] based on the ssake assembler []. in that study, paparazzi improved the consensus sequence and the coverage of the nora virus genome by ~20%, as compared to the previous nora virus reference genome. searchsmallrna, a standalone tool with a graphical interface, used a similar approach to reconstruct viral genomes []. importantly, both programs require known, closely related viral references […]


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SearchSmallRNA institution(s)
Departamento de Virologia, Instituto de Microbiologia, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brasil
SearchSmallRNA funding source(s)
This research was supported by a CAPES doctoral fellowship from the Brazilian government and FAPERJ sponsoring agency.

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