SeaView statistics
Tool stats & trends
Looking to identify usage trends or leading experts?

Protocols
SeaView specifications
Information
Unique identifier | OMICS_08908 |
---|---|
Name | SeaView |
Software type | Package/Module |
Interface | Graphical user interface |
Restrictions to use | None |
Operating system | Unix/Linux, Mac OS, Windows |
Computer skills | Medium |
Version | 4.5.4 |
Stability | Stable |
Maintained | Yes |
Download

Versioning
No version available
Maintainer
- person_outline Manolo Gouy
Publications for SeaView
SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building.
SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny.
SeaView citations
(907)Identification and tissue distribution of chemosensory protein and odorant binding protein genes in Tropidothorax elegans Distant (Hemiptera: Lygaeidae)
[…] d OBPs and CSPs from T. elegans and other Hemipteran species were performed using MAFFT (http://mafft.cbrc.jp/alignment/server/clustering.html), and phylogenetic trees were constructed using PhyML in Seaview v.4 using the Jones-Taylor-Thomton (JTT) model with 1000-fold bootstrap replication in neighbor-joining method (NJ). […]
Hidden MHC genetic diversity in the Iberian ibex (Capra pyrenaica)
[…] up to a 96% identity were downloaded and included in the phylogenetic analyses. For comparative purposes all the sequences used in the Amills et al. [] study were included. Sequences were aligned in Seaview v.4.2.11 [] with ClustalW2 [] default settings. The best substitution model for the Bayesian inference (BI) analysis was identified using the Bayesian information criterion (BIC) in jModeltest […]
Recognition of the genus Thaumatophyllum Schott − formerly Philodendron subg. Meconostigma (Araceae) − based on molecular and morphological evidence
[…] The methodological approach of was followed in order to estimate individual gene trees and a supertree. We have used MAFFT 7 () to individually align the molecular markers and SeaView 4 () to manually adjust them. Bayesian analysis was conducted in MrBayes 3.2.2 (, ) for individual gene trees (Fig. , Suppl. material ) using the GTR + G substitution model. The Markov chain M […]
Comparative Genomics Reveals the Regulatory Complexity of Bifidobacterial Arabinose and Arabino Oligosaccharide Utilization
[…] nomes was build using the Phylogenetic Tree service included in the PATRIC genomic platform (). Phylogenetic trees for the selected protein families were constructed via the PhyML algorithm () in the Seaview software (), using the default parameters and bootstrap values computed with 100 replicates.The comparative genome analysis and reconstruction of arabinose and AOS utilization pathways were pe […]
Infant transmitted/founder HIV 1 viruses from peripartum transmission are neutralization resistant to paired maternal plasma
[…] the Los Alamos National Laboratory (LANL) website (http://www.hiv.lanl.gov/content/sequence/GENE_CUTTER/cutter.html) and then refined manually. Full-length envelope sequences were manually edited in Seaview []. The infant T/F env virus sequences were identified by analysing phylogenetic trees and highlighter plots, and infant consensus sequences of the major T/F lineage were generated using the L […]
Chloroplast variation is incongruent with classification of the Australian bloodwood eucalypts (genus Corymbia, family Myrtaceae)
[…] ned with MAFFT v.7.299b [] and the fast and progressive method FFT-NS-2, suitable for large alignments. One inverted repeat region (IRa) was excluded from the alignment. The alignment was viewed with SeaView v.4.6 [] or Mesquite v.3.10 [] and subsequently processed with GBLOCKS v.0.91b [] using default parameters, which stringently trims alignments allowing no gaps. Hence, the final dataset only i […]
Citations
Looking to check out a full list of citations?

SeaView reviews
Be the first to review SeaView