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Information


Unique identifier OMICS_03138
Name SEBIDA
Alternative name SEx BIas DAtabase
Restrictions to use None
Maintained No

Publication for SEx BIas DAtabase

SEBIDA citations

 (7)
library_books

X to autosome expression and msl 2 transcript abundance correlate among Drosophila melanogaster somatic tissues

2015
PeerJ
PMCID: 4338770
PMID: 25737812
DOI: 10.7717/peerj.771

[…] and autosomal expression for each tissue.Genes were classified as X-linked or autosomal based on the FB2014_03 Release gene map table from FlyBase (). Sex-bias classifications were acquired from the Sex Bias Database (SEBIDA v3.1) (). In particular, we used the “meta” sex-bias classifications which utilize expression data from a variety of sources (; ; ). Genes were classified as non-sex-biased i […]

library_books

Faster X Effects in Two Drosophila Lineages

2014
Genome Biol Evol
PMCID: 4224355
PMID: 25323954
DOI: 10.1093/gbe/evu229

[…] how similar results (results not shown). If we use a 2-fold expression difference between males and females as the cutoff for male- and female-biased expression instead of the cutoffs provided by the Sebida database (see Materials and Methods), the faster-X effect for female-biased genes remains significant (median autosomal KA/KS = 0.0965 vs. X-linked KA/KS = 0.123, P = 3.4 × 10−5). We also check […]

library_books

Mating system variation drives rapid evolution of the female transcriptome in Drosophila pseudoobscura

2014
Ecol Evol
PMCID: 4201433
PMID: 25360260
DOI: 10.1002/ece3.1098

[…] emales with respect to a wild-type pattern of sex bias, we used a microarray dataset that previously determined the sex bias status of genes in D. pseudoobscura (Jiang and Machado ), obtained via the SEBIDA database (Gnad and Parsch ). This study of sex bias used the same array platform as the present study. Following the original study, we used a false discovery rate (FDR) (Benjamini and Hochberg […]

library_books

The Ontogeny and Evolution of Sex Biased Gene Expression in Drosophila melanogaster

2014
Mol Biol Evol
PMCID: 3995337
PMID: 24526011
DOI: 10.1093/molbev/msu072

[…] dS), and their ratio (dN/dS) were extracted for each orthologous group. These values were verified against dN/dS results from several previous studies (; ; ; ; ; ; ; ; ; ; ; ; ; ; ) obtained from the sex bias database SEBIDA (version 3.0; ).Data on standing variation in protein-coding sequences were obtained from the Drosophila Genome Reference Panel (DGRP; Database file date July 18, 2012; ) to c […]

library_books

Demasculinization of the Anopheles gambiae X chromosome

2012
BMC Evol Biol
PMCID: 3428665
PMID: 22607633
DOI: 10.1186/1471-2148-12-69

[…] er values indicate weaker codon usage bias and selection intensity. The opposite association is expected from the FOP index.Data of Drosophila melanogaster sex-biased expression was obtained from the Sebida database (http://141.61.102.16:8080/sebida/index.php) based on a meta-analysis of previously published data [] and a non redundant set of one to one orthologs with A. gambiae genes was establis […]

library_books

Adult Drosophila melanogaster evolved for antibacterial defense invest in infection induced expression of both humoral and cellular immunity genes

2011
BMC Res Notes
PMCID: 3224532
PMID: 21859495
DOI: 10.1186/1756-0500-4-305

[…] the original microarray analysis []. There is also no evidence that female expression should differ from that of males per the meta analysis of 13 studies (Male/Female ratio = 1.07, P = 0.21) in the Sebida database [].Approximately 0.5 μg of total RNA was first reverse transcribed using random primers and SuperScript III reverse transcriptase (Invitrogen) according to manufacturer's protocols. Th […]

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SEBIDA institution(s)
Max Planck Institute of Biochemistry, Martinsried, Germany

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