SECAPR statistics

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Citations per year

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Popular tool citations

chevron_left Phylogenetic inference Adapter trimming Multiple nucleotide sequence alignment Genome assembly Haplotype phasing Reference-assisted assembly Bioinformatics workflows chevron_right
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Tool usage distribution map

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Associated diseases

Associated diseases

SECAPR specifications


Unique identifier OMICS_31227
Alternative name Sequence Capture Processor
Software type Application/Script
Interface Command line interface
Restrictions to use None
Biological technology Illumina
Operating system Unix/Linux, Mac OS, Windows
Programming languages Python, R
License MIT License
Computer skills Advanced
Version 1.1.12
Stability Stable
Maintained Yes



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  • person_outline Tobias Andermann <>

Publication for Sequence Capture Processor

SECAPR institution(s)
Department of Biological and Environmental Sciences, University of Gothenburg, Gothenburg, Sweden; Gothenburg Global Biodiversity Centre, Gothenburg, Sweden; Department of Botany and Plant Biology, University of Geneva, Geneva, Switzerland; Gothenburg Botanical Garden, Gothenburg, Sweden; Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA, USA
SECAPR funding source(s)
Supported by the Swedish Research Council (B0569601), the European Research Council under the European Union’s Seventh Framework Programme (FP/2007-2013, ERC Grant Agreement n. 331024), the Swedish Foundation for Strategic Research, the Faculty of Science at the University of Gothenburg, the David Rockefeller Center for Latin American Studies at Harvard University, and a Wallenberg Academy Fellowship; and a SciLifeLab Bioinformatics Long-term Support from the Wallenberg Advanced Bioinformatics Infrastructure.

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