SECISaln specifications

Information


Unique identifier OMICS_22160
Name SECISaln
Interface Web user interface
Restrictions to use None
Input data A sequence.
Output data A graphical image of the predicted structure and a multiple structural alignment of all SECIS elements.
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Charles Chapple <>

Additional information


http://genome.crg.es/software/secisaln/help.html

Publication for SECISaln

SECISaln in publication

PMCID: 4286016
PMID: 24372851
DOI: 10.1111/mmi.12505

[…] ). instead, in the presence of a selenocysteine insertion sequence (secis) element in the 3′ utr of the genes, the tga codon utilizes the selenocysteine amino acid via the pf trnasec (; ). using the secisaln software we have also identified a putative non-canonical secis element located between the canonical stop codon and 150 bp downstream of the gene (see fig. s6). hence, our results suggest […]


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SECISaln institution(s)
Institut Municipal d’Investigació Mèdica, Universitat Pompeu Fabra and Parc de Recerca Biomedica de Barcelona, Barcelona, Catalonia, Spain; Centre de Regulació Genòmica, Universitat Pompeu Fabra and Parc de Recerca Biomedica de Barcelona, Barcelona, Catalonia, Spain; Unité Architecture et Réactivité de l’ARN, Université Louis Pasteur de Strasbourg, CNRS, Strasbourg, France
SECISaln funding source(s)
Supported by Spanish Ministry of Education and Science; BioSapiens European Network of Excellence; National Institute for Bioinformatics (www.inab.org) a platform of ‘Genoma España’; ToxNuc-E program; ACI BCMS of the French Ministry of Research; Pre-doctoral Fellowship from the Spanish Ministry of Education and Science.

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