SEECER specifications

Information


Unique identifier OMICS_26081
Name SEECER
Alternative name SEquencing Error CorrEction for Rna reads
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Version 0.1.3
Stability Stable
Requirements GNU Scientific Library, SeqAn, JELLYFISH, OPENMP API
Maintained Yes

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Documentation


Maintainer


  • person_outline Ziv Bar-Joseph <>

Publication for SEquencing Error CorrEction for Rna reads

SEECER institution(s)
Machine Learning Department, Carnegie Mellon University, Pittsburgh, PA, USA; Lane Center for Computational Biology, Carnegie Mellon University, Pittsburgh, PA, USA; Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, PA, USA
SEECER funding source(s)
Supported by National Institutes of Health (NIH) [1RO1 GM085022] and National Science Foundation (NSF) [DBI-0965316 award].

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