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Associated diseases

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SeedVicious specifications

Information


Unique identifier OMICS_17399
Name SeedVicious
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input format FASTA, NEWICK
Operating system Unix/Linux, Mac OS
Programming languages Perl
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.3
Stability Stable
Maintained Yes

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Documentation


Maintainer


  • person_outline Antonio Marco <>

Information


Unique identifier OMICS_17399
Name SeedVicious
Interface Web user interface
Restrictions to use None
Input data Some mature microRNA/s and some transcripts and, optionnally, a tree.
Input format FASTA+FASTA/NEWICK
Computer skills Basic
Version 1.1
Stability Stable
Maintained Yes

Documentation


Maintainer


  • person_outline Antonio Marco <>

Publication for SeedVicious

SeedVicious in publication

PMCID: 5896495
PMID: 29666766
DOI: 10.7717/peerj.4615

[…] genes for the seed sequence of three significantly differentially expressed mirnas and eighteen mirnas were predicted using miranda (score ≥150, mfe (minimum free energy) <−20 kcal/mol) (), seedvicious () and targetscan () software. the basic functional targets were classified using gene ontology (go) annotations () and the kegg pathway database (), false discovery rate (fdr) <0.05 […]


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SeedVicious institution(s)
School of Biological Sciences, University of Essex, Colchester, UK
SeedVicious funding source(s)
Supported by the Wellcome Trust [grant number 200585/Z/16/Z].

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