SeedVicious statistics

info info

Citations per year

info

Popular tool citations

chevron_left miRNA target prediction chevron_right
info

Tool usage distribution map

Tool usage distribution map
info info

Associated diseases

Associated diseases
Want to access the full stats & trends on this tool?

SeedVicious specifications

Information


Unique identifier OMICS_17399
Name SeedVicious
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input format FASTA, NEWICK
Operating system Unix/Linux, Mac OS
Programming languages Perl
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.3
Stability Stable
Maintained Yes

Download


download.png

Versioning


No version available

Documentation


Maintainer


  • person_outline Antonio Marco

Information


Unique identifier OMICS_17399
Name SeedVicious
Interface Web user interface
Restrictions to use None
Input data Some mature microRNA/s and some transcripts and, optionnally, a tree.
Input format FASTA+FASTA/NEWICK
Computer skills Basic
Version 1.1
Stability Stable
Maintained Yes

Documentation


Maintainer


  • person_outline Antonio Marco

Publication for SeedVicious

SeedVicious citation

library_books

miRNAome expression profiles in the gonads of adult Melopsittacus undulatus

2018
PeerJ
PMCID: 5896495
PMID: 29666766
DOI: 10.7717/peerj.4615

[…] genes for the seed sequence of three significantly differentially expressed mirnas and eighteen mirnas were predicted using miranda (score ≥150, mfe (minimum free energy) <−20 kcal/mol) (), seedvicious () and targetscan () software. the basic functional targets were classified using gene ontology (go) annotations () and the kegg pathway database (), false discovery rate (fdr) <0.05 […]


Want to access the full list of citations?
SeedVicious institution(s)
School of Biological Sciences, University of Essex, Colchester, UK
SeedVicious funding source(s)
Supported by the Wellcome Trust [grant number 200585/Z/16/Z].

SeedVicious reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review SeedVicious