SeekDeep specifications

Information


Unique identifier OMICS_24666
Name SeekDeep
Software type Toolkit/Suite
Interface Command line interface
Restrictions to use None
Biological technology Illumina
Operating system Unix/Linux, Mac OS, Windows
Programming languages C++, Javascript, Python
License GNU Lesser General Public License version 3.0
Computer skills Advanced
Version 2.5.1
Stability Stable
Requirements g++ or clang++ compiler
Maintained Yes

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Maintainers


  • person_outline Jeffrey Bailey <>
  • person_outline Nick Hathaway <>
  • person_outline Nick Hathaway <>

Additional information


http://baileylab.umassmed.edu/SeekDeep/multiplexTutorial_cmds.html

Publication for SeekDeep

SeekDeep institution(s)
Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA, USA; Curriculum in Genetics and Molecular Biology, University of North Carolina School of Medicine, Chapel Hill, NC, USA; Division of Infectious Diseases, Department of Medicine, University of North Carolina, Chapel Hill, NC, USA; Division of Transfusion Medicine, Department of Medicine, University of Massachusetts Medical School, Worcester, MA, USA
SeekDeep funding source(s)
Supported by NIH [5 R01 AI099473] (in part), 5 R01 AI089819]; NIH training [GM007092 and AI109979].

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