Improves previous visualization approaches by allowing the model to be interactively updated using annotated regions. SegAnnDB is a Web-based computer vision system for DNA copy number profile analysis. It provides accurate annotation of copy number profiles, facilitates interaction between biologists and bioinformaticians, and allows visualization of several copy number profiles simultaneously.
Department of Computer Science, Tokyo Institute of Technology, Tokyo, Japan; Institut Curie, Paris, INSERM U900, Paris, France; Mines ParisTech, Centre for Computational Biology, Fontainebleau, Unité de Recherche en Génomique Végétale INRA-CNRS-Université d'Evry Val d'Essonne, Évry, France; INSERM U830, Paris, France; Aichi Cancer Center Research Institute, Chikusa-ku, Nagoya-city, Japan; INRIA-Sierra Project-Team, Département d'Informatique de l'École Normale Supérieure, Paris, France
SegAnnDB funding source(s)
Supported by the European Research Council (SIERRA-ERC-239993; SMAC-ERC-280032), by Digiteo [DIGITEOBIOVIZ-2009-25D]; the Annenberg Foundation; the French Programme Hospitalier de Recherche Clinique [PHRC IC2007-09]; the French National Cancer Institute [INCA-2007-1-RT-4-IC]; and the French Anti-Cancer League, by a grant-in-Aid from the Ministry of Health, Labor and Welfare of Japan, the Ministry of Education, Culture, Sports, Science and Technology of the Japan, the Japan Society for the Promotion of Science, a Grant-in-Aid for Cancer Research from the Ministry of Health, Labor and Welfare of Japan, and a Grant from Takeda Science Foundation.