SegAnnDB statistics

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Associated diseases

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SegAnnDB specifications

Information


Unique identifier OMICS_04515
Name SegAnnDB
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability No
Maintained No

Publication for SegAnnDB

SegAnnDB in publications

 (2)
PMCID: 4317909
PMID: 24815991
DOI: 10.1111/cas.12442

[…] the log2 ratio of the objective sample. this procedure was repeated 332 times., we defined cna on array cgh data by interactively updating and labeling a maximum likelihood segmentation model using seganndb software.() on each continuous cna, an average of the log2 ratios was calculated., the tumor cell population was calculated from the log2 ratio based on the functional relationship […]

PMCID: 3712326
PMID: 23697330
DOI: 10.1186/1471-2105-14-164

[…] we created 2 annotation graphical user interfaces (guis) for this purpose: a python program for low-density profiles called annotate_breakpoints.py, and a web site for larger profiles called seganndb., we used tkinter in python’s standard library to write annotate_breakpoints.py, a cross-platform gui for annotating low-density dna copy number profiles. the annotator loads several […]


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SegAnnDB institution(s)
Department of Computer Science, Tokyo Institute of Technology, Tokyo, Japan; Institut Curie, Paris, INSERM U900, Paris, France; Mines ParisTech, Centre for Computational Biology, Fontainebleau, Unité de Recherche en Génomique Végétale INRA-CNRS-Université d'Evry Val d'Essonne, Évry, France; INSERM U830, Paris, France; Aichi Cancer Center Research Institute, Chikusa-ku, Nagoya-city, Japan; INRIA-Sierra Project-Team, Département d'Informatique de l'École Normale Supérieure, Paris, France
SegAnnDB funding source(s)
Supported by the European Research Council (SIERRA-ERC-239993; SMAC-ERC-280032), by Digiteo [DIGITEOBIOVIZ-2009-25D]; the Annenberg Foundation; the French Programme Hospitalier de Recherche Clinique [PHRC IC2007-09]; the French National Cancer Institute [INCA-2007-1-RT-4-IC]; and the French Anti-Cancer League, by a grant-in-Aid from the Ministry of Health, Labor and Welfare of Japan, the Ministry of Education, Culture, Sports, Science and Technology of the Japan, the Japan Society for the Promotion of Science, a Grant-in-Aid for Cancer Research from the Ministry of Health, Labor and Welfare of Japan, and a Grant from Takeda Science Foundation.

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