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Segmentum specifications


Unique identifier OMICS_17739
Name Segmentum
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
License MIT License
Computer skills Advanced
Stability Stable
Scipy, SAMtools, Matplotlib
Maintained Yes



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Publication for Segmentum

Segmentum in publications

PMCID: 5772374
PMID: 29399080
DOI: 10.3892/etm.2017.5443

[…] 2 min (sigma-aldrich; merck kgaa) and mounting slides in mounting medium (cat. no. h-5000; vector laboratories, inc., burlingame, ca, usa). to measure infarct area, the contralateral and ipsilateral segmentum sizes of each section (including the striatum, corpus callosum, cortex and midbrain) images were captured at magnification ×10 using a stemi 305 light microscope (carl zeiss ag, oberkochen, […]

PMCID: 5594586
PMID: 28893245
DOI: 10.1186/s12929-017-0366-4

[…] prevents transfer of no from endothelial cells to smooth muscle cells. an immunostaining study established rare presence of ecsod in the brain stem with only occasional cells observed in the central segmentum []., the nrf2/keap1/are (nuclear factor-e2-related factor/kelch-like ech-associated protein 1/antioxidant response element) signaling pathway is an important regulator of cellular […]

PMCID: 5516012
PMID: 28720866
DOI: 10.1038/s41598-017-05979-6

[…] a quantitative archive of long-term ecological responses to past climate transitions. here, we document multi-centennial scale changes in prevalence of trematodes infesting the bivalve host abra segmentum through multiple sea-level fluctuations preserved in brackish holocene deposits of the po plain, italy. prevalence values were significantly elevated (p < 0.01) in samples associated […]

PMCID: 5136663
PMID: 27932914
DOI: 10.3897/BDJ.4.e9541

[…] important species at site 2 was, during all surveys, the cerithiid gastropod bittium reticulatum, whereas the most important species at sites 3 and 4  were, during all surveys, the bivalves abra segmentum and cerastoderma glaucum and the gastropods cyclope neritea and potamides conicus., the spatial variability of the observed species diversity and eveness during each seasonal survey […]

PMCID: 4400407
PMID: 25901123
DOI: 10.3897/zookeys.495.9356

[…] and a female, with the same colour “divis iv. thorax variegatus. abdomen cyaneo-. viridi- et aureo-fasciatum”. he described the female with four teeth on the anal margin (“subdivis. 2. abdominis segmentum 3:tium apice 4-dentatum”) (plate ) and the male without teeth on the anal margin, but with a simple undulation (“subdiv. 3. abdominis segmentum 3:tium apice undulatum”) (plate ). these two […]

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Segmentum institution(s)
Faculty of Medicine and Life Sciences and BioMediTech institute, University of Tampere, Tampere, Finland
Segmentum funding source(s)
This work was funded by the Academy of Finland (project no. 269474), Cancer Society of Finland, and Sigrid Juselius Foundation.

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