SELECTpro statistics

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SELECTpro specifications

Information


Unique identifier OMICS_18588
Name SELECTpro
Interface Web user interface
Restrictions to use Academic or non-commercial use
Input data Some protein sequences.
Output data The global confidence scores and the scores of individual energy terms.
Programming languages C++, Perl
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


Maintainers


  • person_outline Pierre Baldi <>
  • person_outline Arlo Randall <>

Information


Unique identifier OMICS_18588
Name SELECTpro
Software type Application/Script
Interface Command line interface
Restrictions to use Academic or non-commercial use
Input data Some protein sequences.
Output data The global confidence scores and the scores of individual energy terms.
Operating system Unix/Linux
Programming languages C++, Perl
Computer skills Advanced
Version 1.0
Stability Stable
Maintained Yes

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Documentation


Maintainers


  • person_outline Pierre Baldi <>
  • person_outline Arlo Randall <>

Publication for SELECTpro

SELECTpro in publications

 (4)
PMCID: 4987638
PMID: 27530967
DOI: 10.1038/srep31571

[…] orientation-dependent energy term., the evaluation scores from other model quality assessment programs are also extracted as additional features, which include the frst, proq, rfmqa, sift and selectpro software., the frst software’s output is based on four knowledge-based potentials: rapdf potential, solv potential, hydb potential, and tors potential, and the frst energy is a weighted […]

PMCID: 4619059
PMID: 26493701
DOI: 10.1186/s12859-015-0775-x

[…] qa method, modfoldclust2 [], proq2 [], pcons [], apollo [], modelevaluator [], modelcheck2 – an improved version of modelevaluator, qapro – a weighted combination of modelevaluator and apollo, selectpro [], dope [], dfire2 [], opus_psp [], rwplus [], rf_cb_srs_od []). multicom-construct used the consensus (average) ranking of the individual rankings produced by these methods to select top […]

PMCID: 4553833
PMID: 26072473
DOI: 10.1093/bioinformatics/btv235

[…] score generated by modelevaluator (), rwplus score (), dope score () and rf_cb_srs_od score (); proq2 (); model check2 method produced by an improved version of modelevaluator (); a recalibrated selectpro energy (); dope (); dfire2 (); opus_psp (); rwplus (); modelevaluator () and rf_cb_srs_od (). the multi-model qa methods include modfoldclust2 (); pcons (); appollo (); qapro—a weighted […]

PMCID: 4219626
PMID: 25132180
DOI: 10.1038/nsmb.2873

[…] settings and thresholds . the models are reasonable given their low protein identity scores and received good to fair scores on number of model evaluation algorithms that include: proq, qmean, selectpro, and verify3d. model quality results are listed in . the rigid body protein docking program patchdock was used to guide fitting of the cf domains together and assembly of cf into the pol […]


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SELECTpro institution(s)
School of Information and Computer Sciences, University of California, Irvine, CA, USA; Institute for Genomics and Bioinformatics, University of California, Irvine, CA, USA
SELECTpro funding source(s)
Supported by NIH grant LM-07443-01, NSF grants EIA-0321390 and IIS-0513376, and a Microsoft Faculty Research Award.

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