seq2HLA specifications


Unique identifier OMICS_02152
Name seq2HLA
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Some RNA-Seq sequence reads.
Input format FASTQ
Output data The most likely HLA class I and class II types, a P-value for each call, and the expression of each class.
Biological technology Illumina
Operating system Unix/Linux, Mac OS
Programming languages Python, R
Computer skills Advanced
Version 2.2
Stability Stable
Maintained Yes



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Publication for seq2HLA

seq2HLA institution(s)
TRON - Translational Oncology at the University Medical Center of the Johannes Gutenberg University, Mainz, Germany; University Medical Center of the Johannes Gutenberg University Mainz, III, Medical Department, Mainz, Germany; Ganymed Pharmaceuticals AG, Mainz, Germany

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