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seq2HLA | HLA typing from RNA-Seq sequence reads

A method for obtaining an individualXs HLA class I and II type and expression using standard NGS RNA-Seq data. Because the algorithm uses standard RNA-Seq reads and requires no change to laboratory protocols, it can be used for both existing datasets and future studies, thus adding a new dimension for HLA typing and biomarker studies.

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seq2HLA classification

seq2HLA specifications

Unique identifier:
OMICS_02152
Interface:
Command line interface
Biological technology:
Illumina
Programming languages:
Python, R
Stability:
Stable
Software type:
Package/Module
Restrictions to use:
None
Operating system:
Unix/Linux, Mac OS
Computer skills:
Advanced
Maintained:
Yes

seq2HLA distribution

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seq2HLA support

Documentation

Credits

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Publications

Institution(s)

TRON - Translational Oncology at the University Medical Center of the Johannes Gutenberg University, Mainz, Germany

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