SeqAn pipeline

SeqAn specifications


Unique identifier OMICS_14825
Name SeqAn
Alternative name seqan2
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages C++
License BSD 3-clause “New” or “Revised” License
Computer skills Advanced
Version 2.3
Stability Stable
Maintained Yes



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  • person_outline Andreas Döring <>

Publications for SeqAn

SeqAn citation

PMCID: 5333174

[…] developed by the authors was used here to apply filtering rules to the raw vcf and to format contigs for the phylogenetic software). all indel positions were realigned using the code from the seqan [60] library and then excluded. generally, we kept snp positions near indels, except for the regions with high probability of containing strs (for this, we measured the “dimeric” entropy value […]

SeqAn institution(s)
Department of Mathematics and Computer Science, Freie Universität Berlin, Berlin, Germany; Max Planck Institute for Molecular Genetics, Berlin, Germany; imec, Belgium; Intel Corporation (UK) Limited, UK
SeqAn funding source(s)
Supported by the Intel® Parallel Compute Center at FU Berlin.

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