SeqAssem specifications

Information


Unique identifier OMICS_05330
Name SeqAssem
Software type Package/Module
Interface Command line interface
Restrictions to use License purchase required
Input data Some DNA sequences.
Operating system Unix/Linux
License Commercial
Computer skills Advanced
Stability Stable
Free trial Yes
Maintained Yes

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SeqAssem in publications

 (5)
PMCID: 5633629
PMID: 28721563
DOI: 10.1007/s00425-017-2741-5

[…] ). each 20 μl reaction solution for pcr was conducted as described by ryšánek et al. (). the pcr protocol followed that of škaloud and rindi (). sequencing reads were assembled and edited using seqassem software (hepperle ). newly obtained klebsormidium rbcl sequence and the sequences available in the genbank database were used to produce an alignment for phylogenetic analyses. the final […]

PMCID: 5132012
PMID: 27907126
DOI: 10.1371/journal.pone.0167552

[…] 851 partial 16s rrna gene)., a sequence of the 16s rrna locus in a. gracile strain niva-cya 851 and sequences of the sxt gene cluster in all four aphanizomenon strains were analyzed using the seqassem software package (version 07/2008) []. the align ms windows-based manual sequence alignment editor (version 03/2007) [] was used to obtain dna sequence alignments, which were then corrected […]

PMCID: 3598724
PMID: 23402662
DOI: 10.1186/1471-2148-13-39

[…] sequencing v3.1 kit (applied biosystems, darmstadt, germany) and separated on an abi prism 3100 (applied biosystems, darmstadt, germany) sequencer. the sequences were assembled using the program seqassem []. for genbank accession numbers of newly determined sequences for the 29 heterococcus strains see additional file ; the accession numbers for the four green algal sequences determined […]

PMCID: 3449377
PMID: 23055613
DOI: 10.6026/97320630008695

[…] internal primers atps-r673 (5í-agt ctt cgt ata atg ggg-3í), atps-f1005 (5í-att acg ggt tcc ttg gag-3 í) and atps-r1075 (5 í-gta gcg acc ggc ctg acg-3í). sequences were viewed and assembled using the seqassem software []. accession number for the atps gene sequence of a. ferrooxidans atcc 23270: fm177944., e. coli bl21 startm (de3) transformation with pet101-atps plasmid was made according […]

PMCID: 3320473
PMID: 16102306
DOI: 10.3201/eid1108.050152

[…] sequencer with big dye chemistry (applied biosystems), according to abi protocols, by the st. jude hartwell center for bioinformatics and biotechnology., sequencing results were assembled by using seqassem version 09/2004 (http://www.gwdg.de/~dhepper/sequences were subsequently queried against the ncbi nonredundant database by using both nucleotide-blast [blastn] and protein-blast [blastp] […]


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