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seqbias | An approach to bias correction in RNA-Seq

Estimation of per-position bias in high-throughput sequencing data. This package implements a model of per-position sequencing bias in high-throughput sequencing data using a simple Bayesian network, the structure and parameters of which are trained on a set of aligned reads and a reference genome sequence.

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seqbias forum

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seqbias classification

seqbias specifications

Unique identifier:
OMICS_01237
Interface:
Command line interface
Operating system:
Unix/Linux, Mac OS, Windows
License:
GNU Lesser General Public License version 3.0
Version:
1.8.0
Requirements:
GenomicRanges, Biostrings, methods
Software type:
Package/Module
Restrictions to use:
None
Programming languages:
R
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes

seqbias distribution

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No versioning.

seqbias support

Documentation

Maintainer

  • Daniel Jones <>

Credits

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Publications

Institution(s)

Department of Computer Science and Engineering, University of Washington, Seattle, WA, USA; Department of Genome Sciences, University of Washington, Seattle, WA, USA; Fred Hutchinson Cancer Research Center, Seattle, WA, USA; Department of Microbiology, University of Washington, Seattle, WA, USA

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