SeqBuster protocols

SeqBuster specifications


Unique identifier OMICS_00367
Name SeqBuster
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes


  • miraligner



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  • person_outline Eulalia Martí <>
  • person_outline Xavier Estivill <>

Additional information

Publications for SeqBuster

SeqBuster IN pipeline

PMCID: 5798962
PMID: 29219730
DOI: 10.1080/15476286.2017.1403003

[…] per read were allowed). we compiled a comprehensive annotation set from mirbase/mirgenedb [74,78] for mirnas, pirbase/pirnabank for pirnas [79,80], gencode [73] for other rnas and trnas. we used seqbuster [81] to get isomir and mirna profiles of our samples. to count the reads mapped on other rnas, htseq [82] was utilized in a python script. we used a threshold of 10 median read count per […]

SeqBuster institution(s)
Genetic Causes of Disease Group, Genes and Disease Program, Centre for Genomic Regulation (CRG), Barcelona, Spain; Centro de Investigacion Biomedica en Red en Epidemiologıa y Salud Publica (CIBERESP), Barcelona, Spain; Experimental and Health Sciences Department, Pompeu Fabra University, Barcelona, Catalonia, Spain
SeqBuster funding source(s)
Supported by Spanish Ministry of Health Fondo de Investigaciones Sanitarias (PI081367) and Instituto de Salud Carlos III (CIBERESP), Spanish Ministry of Science and Innovation (SAF2008-00357) the Sixth Framework Programme of the European Commission through the SIROCCO integrated project LSHG-CT-2006-037900, the Spanish Ministry of Science and Innovation (SAF2008-00357), the Spanish Ministry of Health and a fellowship from the Spanish Ministry of Science and Innovation MICINN.

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