SeqControl specifications

Information


Unique identifier OMICS_08563
Name SeqControl
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Sequence data
Input format BAM
Operating system Unix/Linux
Programming languages Perl, R
Computer skills Advanced
Version 0.0.1
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Paul Boutros

Publication for SeqControl

SeqControl citation

library_books

The parameter sensitivity of random forests

2016
BMC Bioinformatics
PMCID: 5009551
PMID: 27586051
DOI: 10.1186/s12859-016-1228-x

[…] try factor = 1 (18 √p) and mtry factor = 2 (2•18√p) showing good performance. Given this information and the number of variables in the data, one to all variables were selected as mtry values for the SeqControl dataset (p = 1-15), the mtry values 1, 5, 11, 22, 55, 110, 220, 550, 1100, 2200 were selected for the NSCLC data (p = 12,138). The NSCLC values were obtained by selecting factor levels (1/1 […]

SeqControl institution(s)
Informatics & Biocomputing Platform, Ontario Institute for Cancer Research, Toronto, ON, Canada

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