SeqEM pipeline

SeqEM specifications


Unique identifier OMICS_00074
Name SeqEM
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Version 1.0
Stability Stable
Maintained Yes


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  • person_outline Eden Martin <>
  • person_outline SeqEM Team <>

Publication for SeqEM

SeqEM IN pipeline

PMCID: 3823931
PMID: 24244370
DOI: 10.1371/journal.pone.0078823

[…] of mapped reads, resulting in a per gene expression metric: reads per kilobase per million mapped (rpkm). reads that had between two and five valid alignments were assigned a single location using seqem [14]., a subset of 5% (108,362) of the germline polymorphisms in ludlu-1 were selected, at random, for comparison with the somatic variants. all single nucleotide substitutions were annotated […]

SeqEM institution(s)
John P Hussman Institute for Human Genomics and the Dr John T Macdonald Foundation Department of Human Genetics, Miller School of Medicine, University of Miami, Miami, FL, USA
SeqEM funding source(s)
Supported by National Human Genome Research Institute (RC2HG005605), National Institute for Neurology and Stroke (U54NS065712 and R01NS026630).

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