SeqFeatR statistics

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Associated diseases

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SeqFeatR specifications

Information


Unique identifier OMICS_12137
Name SeqFeatR
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Sequence
Input format FASTA
Operating system Unix/Linux
License GNU General Public License version 3.0
Computer skills Advanced
Version 0.2.7
Stability Stable
Requirements
qvalue, plyr, Biostrings, ggplot2, scales, plotrix, widgetTools, xtable, coda, tcltk, ape, tcltk2, phangorn, R(≥3.2.2), calibrate, R2jags
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

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Documentation


Maintainer


  • person_outline Betti Budeus <>

Information


Unique identifier OMICS_12137
Name SeqFeatR
Interface Web user interface
Restrictions to use None
Input data Sequence alignment
Input format FASTA
License GNU General Public License version 3.0
Computer skills Basic
Version 0.2.0
Stability Stable
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

Documentation


Maintainer


  • person_outline Betti Budeus <>

Publication for SeqFeatR

SeqFeatR in publication

PMCID: 4850382
PMID: 27126912
DOI: 10.1038/srep24883

[…] already. in the current study, we performed a multiple sequence alignment of subtype a-derived gp120 sequences to discover associations of amino acids with tropism at each alignment position using seqfeatr. we observed five significantly different regions within gp120. the association plot is shown in . the most significant differences in amino acid composition could be observed for positions […]


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SeqFeatR institution(s)
Research Group Bioinformatics, Faculty of Biology, University of Duisburg-Essen, Essen, NRW, Germany; Institute for Virology, University Hospital Düsseldorf, Düsseldorf, NRW, Germany
SeqFeatR funding source(s)
Funding for this work was provided by Deutsche Forschungsgemeinschaft, grant TRR 60 / B1.

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