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SeqHound specifications

Information


Unique identifier OMICS_30614
Name SeqHound
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Windows
Programming languages C
Computer skills Advanced
Version 2.5
Stability Stable
Maintained No

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Publication for SeqHound

SeqHound citations

 (2)
call_split

SNAD: sequence name annotation based designer

2009
BMC Bioinformatics
PMCID: 2739203
PMID: 19682364
DOI: 10.1186/1471-2105-10-251
call_split See protocol

[…] AD processes it as a list of identifiers separated by one or more of the following symbols: space, new line, tabulator, or comma. To map IDs on database entries, Bio::DB::(GenBank, SwissProt, EMBL or SeqHound) drivers and Bio::EnsEMBL::DBSQL::DBAdaptor are used. SNAD uses standard BioPerl functions from Bio::Seq for extracting features/annotation from the database entries (GenBank/RefSeq/GenPept, […]

library_books

Atlas – a data warehouse for integrative bioinformatics

2005
BMC Bioinformatics
PMCID: 554782
PMID: 15723693
DOI: 10.1186/1471-2105-6-34

[…] ored and integrated: full record, SQL-based, and distributed.Full record systems like SRS [] and Entrez [] store the intact record in a table and extract specific fields to index and cross-reference. SeqHound [] is a powerful system that stores Entrez information (fully annotated sequence and structure information) locally and can be accessed programmatically through application programming interf […]


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SeqHound institution(s)
Department of Biochemistry, University of Toronto, Toronto, ON, Canada; Samuel Lunenfeld Research Institute, Toronto, ON, Canada
SeqHound funding source(s)
Supported by the Canadian Institutes of Health Research Genome grant.

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