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Seqinspector specifications

Information


Unique identifier OMICS_11202
Name Seqinspector
Interface Web user interface
Restrictions to use None
Computer skills Basic
Maintained Yes

Taxon


  • Primates
    • Homo sapiens
  • Rodents
    • Mus musculus

Maintainer


  • person_outline Marcin Piechota

Additional information


http://seqinspector.readthedocs.io/en/latest/

Publication for Seqinspector

Seqinspector citations

 (2)
library_books

Cell type specific gene expression patterns in the knee cartilage in an osteoarthritis rat model

2017
PMCID: 5748428
PMID: 29134405
DOI: 10.1007/s10142-017-0576-6

[…] the enrichr cell types (gene atlas) module was used. the identification of over-represented transcription factor binding sites (tfbss) in the regulatory regions of genes was performed using the seqinspector resource (piechota et al. ). gene symbol lists were submitted, and default parameters were used., we used whole-genome affymetrix rat gene 2.0 st microarrays to analyse the alterations […]

library_books

Transcriptional signatures of steroid hormones in the striatal neurons and astrocytes

2017
BMC Neurosci
PMCID: 5381047
PMID: 28381250
DOI: 10.1186/s12868-017-0352-5

[…] for cell-type enrichment of mrna, a recently published brain transcriptome database was used¬†[]. the identification of over-represented transcription factor binding sites was performed using the seqinspector database with default parameters []., we estimated levels of nuclear steroid receptors in neuronal and astroglial primary cultures using quantitative pcr (fig.¬†; upper panel). […]


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Seqinspector institution(s)
Department of Molecular Neuropharmacology, Institute of Pharmacology Polish Academy of Sciences, Krakow, Poland
Seqinspector funding source(s)
Supported by the Polish National Science Centre grant [2011/01/N/NZ2/04827]; and by the Polish National Science Centre grant [2011/03/D/NZ3/01686].

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