SeqLib statistics

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Citations per year

Number of citations per year for the bioinformatics software tool SeqLib
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Tool usage distribution map

This map represents all the scientific publications referring to SeqLib per scientific context
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Associated diseases

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SeqLib specifications

Information


Unique identifier OMICS_14682
Name SeqLib
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input format BAM, SAM, CRAM
Output format BAM, SAM, CRAM
Operating system Unix/Linux, Mac OS
Programming languages C++
License Apache License version 2.0
Computer skills Advanced
Version 1.0
Stability Stable
Maintained Yes

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Versioning


No version available

Documentation


Maintainer


  • person_outline Rameen Beroukhim

Publication for SeqLib

SeqLib citation

library_books

Differential Selection on Carotenoid Biosynthesis Genes as a Function of Gene Position in the Metabolic Pathway: A Study on the Carrot and Dicots

2012
PLoS One
PMCID: 3377682
PMID: 22737218
DOI: 10.1371/journal.pone.0038724

[…] ce datasets for color groups were obtained by sampling as many sequences from the Western and the Eastern populations as observed in each color group. Neutrality statistics were then calculated using SEQLIB (seqlib.sourceforge.net). The rank value was used to make a two-tailed test for Tajima’s D and a one-tailed test for lowest normalized Fay and Wu’s H values. As FST is influenced by the mutatio […]


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SeqLib institution(s)
The Broad Institute of Harvard and MIT, Cambridge, MA, USA; Bioinformatics and Integrative Genomics, Harvard University, Cambridge, MA, USA; Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA, USA
SeqLib funding source(s)
This work was supported by National Institutes of Health (T32 HG002295/HG/NHGRI, U54CA143798 and R01CA188228), DFCI-Novartis Drug Discovery Program, and the Cure Starts Now Foundation.

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