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- Software type:
- Restrictions to use:
- Biological technology:
- Programming languages:
- Command line interface
- Input data:
- A matrix with methylation values; a vector specifying the classes of columns (only two-class case is supported currently) or a continuous variable; location information about the methylation probes in GRanges format
- Operating system:
- Unix/Linux, Mac OS, Windows
- Computer skills:
(Kolde et al., 2016) seqlm: an MDL based method for identifying differentially methylated regions in high density methylation array data. Bioinformatics.
- Raivo Kolde <rkolde at gmail.com>
Institute of Computer Science, University of Tartu, Tartu, Estonia; Center for Computational and Integrative Biology, Massachusetts General Hospital, Boston, MA, USA; Institute of Molecular and Cell Biology, University of Tartu, Tartu, Estonia
Link to literature
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