seqLogo statistics

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Citations per year

Number of citations per year for the bioinformatics software tool seqLogo

Tool usage distribution map

This map represents all the scientific publications referring to seqLogo per scientific context
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seqLogo specifications


Unique identifier OMICS_10709
Name seqLogo
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data DNA matrix
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU Lesser General Public License version 3.0
Computer skills Advanced
Version 1.46.0
Stability Stable
methods, grid, stats4
Maintained Yes


No version available



  • person_outline Oliver Bembom

seqLogo citations


Bioinformatic characterization of the Anoctamin Superfamily of Ca2+ activated ion channels and lipid scramblases

PLoS One
PMCID: 5868767
PMID: 29579047
DOI: 10.1371/journal.pone.0192851
call_split See protocol

[…] members. shows three examples of sequences that were disregarded because they did not behave as the rest of the members in the superfamily (see ). Sequence logo plots were generated with the program SEQLOGO [] for all filtered alignments focusing on the positions of the functional residues ().The full sequences of all proteins in the superfamily that passed our filtering criteria were used to run […]


Identification of potential regulatory mutations using multi omics analysis and haplotyping of lung adenocarcinoma cell lines

Sci Rep
PMCID: 5862974
PMID: 29563587
DOI: 10.1038/s41598-018-23342-1

[…] from a variant sequence were compared with those from a reference sequence. Sequence logos for the position weight matrix of the binding consensus were created from TRANSFAC matrices using R library seqLogo. […]


Detection of Proteome Diversity Resulted from Alternative Splicing is Limited by Trypsin Cleavage Specificity*

PMCID: 5836368
PMID: 29222161
DOI: 10.1074/mcp.RA117.000155

[…] f each splice junctions in coding region (5′ or 3′ UTRs were excluded) of protein coding transcripts from genome sequence. After calculating the nucleotide composition at each position, the R package seqLogo was used to plot the corresponding sequence logo for sequences 4 base pairs up- and downstream from the splicing site. […]


Maternal variant in the upstream of FOXP3 gene on the X chromosome is associated with recurrent infertility in Japanese Black cattle

BMC Genet
PMCID: 5719641
PMID: 29212449
DOI: 10.1186/s12863-017-0573-8
call_split See protocol

[…] s, scores, and relative scores, for the neighboring g.92,377,635A > G sequence (± 20 bp) were analyzed with the JASPAR database []. Graphical representation of the frequency matrix was represented by SeqLogo []. […]


JUNB governs a feed forward network of TGFβ signaling that aggravates breast cancer invasion

Nucleic Acids Res
PMCID: 5814809
PMID: 29186616
DOI: 10.1093/nar/gkx1190

[…] with a slight modification of the default settings (maximum width: 10) (MEME-ChIP version 4.10; (). The logo plots were generated using the R package seqLogo. Mapping of TFBSs to the specific genomic regions were calculated by the CisGenome. Gene Ontology (GO) enrichment analysis was performed using the Database for Annotation, Visualization, and I […]


Transcriptome profiling of aging Drosophila photoreceptors reveals gene expression trends that correlate with visual senescence

BMC Genomics
PMCID: 5698953
PMID: 29162050
DOI: 10.1186/s12864-017-4304-3

[…] motif assigned based on random probabilities between 0 and 0.145 (the maximum number of genes in the background gene set matching to any specific motif was 14.5%). Sequence motifs were plotted using seqLogo (v1.42.0). Network analysis for co-occurring motifs was performed using igraph (v1.0.1), and for age-regulated genes using GeneMania []. To identify candidate transcription factors that bind e […]

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