SeqLogos specifications

Information


Unique identifier OMICS_21154
Name SeqLogos
Interface Web user interface
Restrictions to use None
Input data Some protein sequences.
Computer skills Basic
Stability Stable
Maintained Yes

Versioning


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Maintainers


  • person_outline Secretaria general de ciencia <>
  • person_outline Pedro Reche <>
  • person_outline SeqLogos <>

SeqLogos in publications

 (4)
PMCID: 5943503
PMID: 29774024
DOI: 10.3389/fimmu.2018.00872

[…] go-slim cellular component enrichment terms were retrieved from the output (). when no go-slim cellular component was given to an entry, the terms assigned in uniprot were manually annotated. seqlogos of the binding cores were generated using the weblogo3 online tool () using as input the 9mers retrieved as most likely binding registers from the netpanmhcii binding prediction., graphpad […]

PMCID: 5711878
PMID: 29196683
DOI: 10.1038/s41598-017-16780-w

[…] by aligning with muscle alignment tool (tableĀ ).table 1 , graphical representation of htrpv1 with the determined lwi residues used in this study was prepared with protter-visualize proteoforms . seqlogos were generated with the weblogo webserver (http://weblogo.berkeley.edu/),., distance matrix was generated using mega 5. the alignments of all the lipid-water interface regions and different […]

PMCID: 5472282
PMID: 28617832
DOI: 10.1371/journal.pone.0179173

[…] []. for the ncbi blast pdb search we used the quadruple of repeat motifs., for a graphic representation of an amino acid multiple repeat sequence alignments, we used sequence logos (seqlogos) [] generated using weblogo online tool []., the positions and frequencies of variable amino acid residues (vrs) within tandem repeats were identified using rr by calculating frequencies […]

PMCID: 4360255
PMID: 25052519
DOI: 10.1186/s12862-014-0162-7

[…] to its frequency in the sequences and with the total height of all letters on each position reflecting the information content of the position. we used the seqlogo r package to create all the seqlogos (http://www.bioconductor.org/packages/release/bioc/html/seqlogo.html)., to facilitate the reading and understanding of the seqlogo graphs, we will briefly summarize the calculation […]


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