seqmagick | File filtering

A little utility to expose the file format conversion in BioPython in a convenient way. Seqmagick can be used to query information about sequence files, convert between types, and modify sequence files. All functions are accessed through subcommands. Most commands support gzip (files ending in .gz) and bzip (files ending in .bz2 or .bz) compressed inputs and outputs.

seqmagick specifications

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Information

Unique identifier	OMICS_11290
Software type	Toolkit/Suite
Interface	Command line interface
Restrictions to use	None
Input format	FASTA
Output format	PHYLIP, FASTA
Operating system	Unix/Linux
Programming languages	Python
License	GNU General Public License version 3.0
Computer skills	Advanced
Stability	Stable
Requirements	BioPython
Maintained	Yes

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Documentation

Issues: https://github.com/fhcrc/seqmagick/issues

seqmagick institution(s)

The Fred Hutchinson Cancer Research Center, Seattle, WA, USA

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