SeqMan Pro statistics

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SeqMan Pro specifications

Information


Unique identifier OMICS_01810
Name SeqMan Pro
Alternative names Seqman, seqmanpro
Software type Package/Module
Interface Command line interface
Restrictions to use License purchase required
Operating system Unix/Linux, Mac OS, Windows
License Commercial
Computer skills Advanced
Stability Stable
Free trial Yes
Maintained Yes

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SeqMan Pro in publications

 (310)
PMCID: 5915611
PMID: 29691483
DOI: 10.1038/s41598-018-24870-6

[…] at the pirbright institute were determined as previously described using an illumina miseq. and assembly of raw paired-end reads to consensus-level sequences was undertaken using seqman ngen® and seqman pro™ (lasergene package version 12; dnastar, inc.)., the full orf polyprotein-coding genetic region was analyzed. to validate the alignment, each of the protein coding region nt sequences […]

PMCID: 5915737
PMID: 29691337
DOI: 10.1128/mBio.00430-18

[…] viruses of both the ca/04 and pr/8 types were amplified by one-step reverse transcription-pcr (qiagen), gel extracted, sanger sequenced (hartwell center for bioinformatics, sjcrh), and analyzed by seqman pro (dnastar, madison, wi) and bioedit (ibis biosciences, carlsbad, ca)., influenza a virus genes from ca/04 and pr/8 were cloned into phw2000 plasmid, propagated in escherichia coli top 10 […]

PMCID: 5911435
PMID: 29681622
DOI: 10.1038/s41398-018-0136-4

[…] using bigdye terminator chemistry 3.1 (abi) and analysed using a 3730xl genetic analyzer (applied biosystems, foster city, ca, usa). sequencing data was analysed using dnastar lasergene 10 seqman pro8 (dnastar, inc. madison, wi, usa). validations were performed using genomic dna isolated from whole blood where possible or alternatively, dna extracted from lcls. where possible, […]

PMCID: 5923486
PMID: 29652800
DOI: 10.3390/v10040192

[…] and using a range of kmers []. only contigs which matched the fmdv library after running a basic local alignment search tool (blast) algorithm [] were assembled into consensus sequences using seqman pro software implemented in the dnastar lasergene 13 package (dnastar). to confirm the consensus, reads were mapped using burrows-wheeler aligner (bwa) []. mapped reads were visualised using […]

PMCID: 5890292
PMID: 29632309
DOI: 10.1038/s41598-018-23739-y

[…] sequences of a given cfd dna component were derived from at least three sequences of cloned dna. primary contigs (nodes) assembled by spades from the illumina reads were further assembled using seqman pro of dnastar or geneious (v 8). guided assemblies were done with seqman pro, geneious and clc genomics workbench software (v 8.0). since spades had produced too many obviously misassembled […]


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