SeqMap statistics

info info

Citations per year

Number of citations per year for the bioinformatics software tool SeqMap
info

Tool usage distribution map

This map represents all the scientific publications referring to SeqMap per scientific context
info info

Associated diseases

info

Popular tool citations

chevron_left Retroviral vector integration site detection chevron_right
Want to access the full stats & trends on this tool?

Protocols

SeqMap specifications

Information


Unique identifier OMICS_09522
Name SeqMap
Interface Web user interface
Restrictions to use None
Computer skills Basic
Version 3.0
Stability Stable
Maintained No

Documentation


Maintainer


This tool is not available anymore.

Publications for SeqMap

SeqMap citations

 (2)
library_books

VISPA2: a scalable pipeline for high throughput identification and annotation of vector integration sites

2017
BMC Bioinformatics
PMCID: 5702242
PMID: 29178837
DOI: 10.1186/s12859-017-1937-9

[…] er this setting, VISPA2 was able to correctly identify 440 IS (TP, 98.9%) and no FP, and 15 FN. We then run the simulations on other available tools for IS identification such as VISPA [], Mavric [], SeqMap [] and QuickMap [] and we evaluated their performances (Table , Additional file ). VISPA2 showed a precision and recall of 1.0 and 0.97 respectively, a clear improvement with respect to VISPA [ […]

call_split

Differences in Vector Genome Processing and Illegitimate Integration of Non Integrating Lentiviral Vectors

2016
Gene Ther
PMCID: 5269419
PMID: 27682478
DOI: 10.1038/gt.2016.69
call_split See protocol

[…] m the first LAM-PCR experimental group were analyzed by pyrosequencing (Roche 454 FLX Titanium) at the Indiana University Center for Genomics and Bioinformatics, Bloomington IN and analyzed using the SeqMap 2.0 web server platform. Subsequent samples were analyzed using the Illumina MiSeq platform at the Genomics Core Facility of the University of Notre Dame. Paired-end reads of 250 base-pair were […]


Want to access the full list of citations?
SeqMap institution(s)
Center for Computational Biology and Bioinformatics, Indiana University School of Medicine, Indianapolis, IN, USA; Department of Pediatrics, Herman B Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, IN, USA; Department of Medical and Molecular Genetics, Indiana University School of Medicine, Indianapolis, IN, USA; Division of Biostatistics, Department of Medicine, Indiana University School of Medicine, Indianapolis, IN, USA; Department of Medicine, Indiana University School of Medicine, Indianapolis, IN, USA; Department of Microbiology and Immunology, Indiana University School of Medicine, Indianapolis, IN, USA; Section of Pediatric Hematology/Oncology, Riley Hospital for Children, Indianapolis, IN, USA

SeqMap reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review SeqMap