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seqMINER

Allows comparison and integration of multiple ChIP-seq datasets and extraction of qualitative as well as quantitative information. seqMINER can handle the biological complexity of most experimental situations and proposes methods to the user for data classification according to the analysed features. In addition, through multiple graphical representations, seqMINER allows visualization and modelling of general as well as specific patterns in a given dataset.

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seqMINER forum

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seqMINER classification

seqMINER specifications

Software type:
Package/Module
Restrictions to use:
None
Operating system:
Unix/Linux, Mac OS, Windows
License:
GNU General Public License version 2.0
Stability:
Stable
Interface:
Command line interface, Graphical user interface
Biological technology:
Illumina, Life Technologies, Pacific Biosciences, Roche
Programming languages:
Java
Computer skills:
Advanced
Maintained:
Yes

seqMINER distribution

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No versioning.

seqMINER support

Maintainer

  • Laszlo Tora <>

Credits

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Publications

Institution(s)

Institut de Génétique et de Biologie Moléculaire et Cellulaire (IGBMC), CNRS UMR 7104, INSERM U 596, Université de Strasbourg, ILLKIRCH, CHU de Strasbourg, France

Link to literature

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