seqMINER protocols

seqMINER specifications

Information


Unique identifier OMICS_00460
Name seqMINER
Software type Package/Module
Interface Command line interface, Graphical user interface
Restrictions to use None
Biological technology Illumina, Life Technologies, Pacific Biosciences, Roche
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


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Maintainer


  • person_outline Laszlo Tora <>

Publication for seqMINER

seqMINER IN pipeline

2017
PMCID: 5501531
PMID: 28683804
DOI: 10.1186/s13059-017-1261-8

[…] signaling cascades and responses to hormone stimuli, both in control conditions and after flg22 treatment (additional file 1: figure s24f)., we next compared the two chip-seq datasets using seqminer and diffreps, which allows qualitative and quantitative comparisons to be made between a reference set of genomic positions and multiple chip-seq datasets [17]. using this approach, […]

seqMINER institution(s)
Institut de Génétique et de Biologie Moléculaire et Cellulaire (IGBMC), CNRS UMR 7104, INSERM U 596, Université de Strasbourg, ILLKIRCH, CHU de Strasbourg, France

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