Main logo
?
tutorial arrow
×
Create your own tool library
Bookmark tools and put favorites into folders to find them easily.

SeqMonk

A program to enable the visualisation and analysis of mapped sequence data. SeqMonk was written for use with mapped next generation sequence data but can in theory be used for any dataset which can be expressed as a series of genomic positions. It's main features are: (i) Import of mapped data from mapped data (BAM/SAM/bowtie etc), (ii) Creation of data groups for visualisation and analysis, (iii) Visualisation of mapped regions against an annotated genom, (iv) Flexible quantitation of the mapped data to allow comparisons between data sets, (v) Statistical analysis of data to find regions of interest and (vi) Creation of reports containing data and genome annotation.

User report

tutorial arrow
×
Vote up tools and offer feedback
Give value to tools and make your expertise visible
Give your feedback on this tool
Sign up for free to join and share with the community
Sort by:

1 user review

star_border star_border star_border star_border star_border
star star star star star

1 user review

star_border star_border star_border star_border star_border
star star star star star
Catherine SIRVEN's avatar image

Catherine SIRVEN

star_border star_border star_border star_border star_border
star star star star star

Used it succesfully to visualise small RNA datasets.

SeqMonk forum

tutorial arrow
×
Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.
Take part in the discussion
Sign up for free to ask question and share your advices

No open topic.

SeqMonk classification

SeqMonk specifications

Unique identifier:
OMICS_01936
Interface:
Graphical user interface
Operating system:
Unix/Linux
License:
GNU General Public License version 2.0
Version:
0.32.0
Maintained:
Yes
Software type:
Package/Module
Restrictions to use:
None
Programming languages:
Java
Computer skills:
Medium
Stability:
Stable

SeqMonk distribution

versioning

tutorial arrow
×
Upload and version your source code
Get a DOI for each update to improve tool traceability. Archive your releases so the community can easily visualize progress on your work.
Facilitate your tool traceability
Sign up for free to upload your code and get a DOI

No versioning.

SeqMonk support

Maintainer

  • Simon Andrews <>

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.