SeqMule pipeline

SeqMule specifications

Information


Unique identifier OMICS_11956
Name SeqMule
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data Single-end or paired-end
Input format FASTQ or BAM
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Kai Wang <>

Publication for SeqMule

SeqMule IN pipeline

2017
PMCID: 5655208
PMID: 29113313
DOI: 10.18632/oncotarget.19010

[…] of target regions was 121.7x., the raw data generated from illumina nextseq550 were converted using bcl2tofastq tools provided by illumina. the data analysis of exomes was performed by using the seqmule pipeline1. the final variant call format files (vcfs) were uploaded on the variantstudio illumina (illumina san diego, ca, usa) software to perform annotation and filtration steps. […]

SeqMule institution(s)
Zilkha Neurogenetic Institute, University of Southern California, Los Angeles, CA, USA; Department of Preventive Medicine, Keck School of Medicine, University of Southern California, Los Angeles, CA, USA; School of Forestry and Environment, Nanjing Forestry University, Nanjing, Jiangsu, China Departments of Systems Biology and Biomedical Informatics, Columbia University, New York, NY, USA; Stanley Institute for Cognitive Genomics, Cold Spring Harbor Laboratory, New York, NY, USA; Utah Foundation for Biomedical Research, 150 S 100 W, Provo, UT, USA; Department of Psychiatry & Behavioral Sciences, Keck School of Medicine, University of Southern California, Los Angeles, CA, USA
SeqMule funding source(s)
This work was supported by National Institute of Health grant HG006465.

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