SeqPig specifications


Unique identifier OMICS_01226
Name SeqPig
Software type Framework/Library
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Parallelization MapReduce
License MIT License
Computer skills Advanced
Stability Stable
High performance computing Yes
Maintained Yes


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Publication for SeqPig

SeqPig in publications

PMCID: 4539931
PMID: 26282399
DOI: 10.1186/s13062-015-0071-8

[…] workload with frameworks such as hadoop and spark. to this end, we have participated in development of tools that allow bioinformatics data to be efficiently processed in hadoop: hadoop-bam and seqpig [, ]. this work is continued by integrating hadoop and spark into our iaas environment and providing easy to use interfaces for data intensive computing., the stockholm genomics core platform […]

PMCID: 4455317
PMID: 26045962
DOI: 10.1186/s13742-015-0058-5

[…] a generic adaptor like hadoop streaming library) regular linux applications cannot generally be used directly on it. two interesting frameworks to simplify scripting in hadoop are biopig [] and seqpig [], which are both built on top of the apache pig framework and are capable of automatically distributing data and parallelizing tasks., at the moment, however, hadoop is incompatible […]

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SeqPig institution(s)
Aalto University School of Science and Helsinki Institute for Information Technology HIIT, Finland; International Computer Science Institute, Berkeley, CA, USA; CRS4-Center for Advanced Studies, Research and Development in Sardinia, Italy; CSC-IT Center for Science, Finland

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