Seqping statistics

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Associated diseases

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Seqping specifications

Information


Unique identifier OMICS_11180
Name Seqping
Software type Toolkit/Suite
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Perl, Shell (Bash)
License GNU General Public License version 3.0
Computer skills Advanced
Stability Alpha
Maintained Yes

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Publication for Seqping

Seqping in pipeline

2017
PMCID: 5591544
PMID: 28886750
DOI: 10.1186/s13062-017-0191-4

[…] out against the e. guineensis mrna dataset, using an identity cutoff of >90%. predictions that have both nr plant refseq and e. guineensis mrna support were selected for further analysis., seqping [], a customized gene prediction pipeline based on maker2 [], was developed by mpob. full-length open reading frames (orfs) were identified from the e. guineensis mrna dataset described […]


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Seqping in publication

PMCID: 5591544
PMID: 28886750
DOI: 10.1186/s13062-017-0191-4

[…] of fa biosynthesis and disease resistance genes, and the development of an annotation database and bioinformatics tools., using two independent gene-prediction pipelines, fgenesh++ and seqping, 26,059 oil palm genes with transcriptome and refseq support were identified from the oil palm genome. these coding regions of the genome have a characteristic broad distribution of gc3 […]


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Seqping institution(s)
Malaysian Palm Oil Board, 6, Persiaran Institusi, Bandar Baru Bangi, Kajang, Selangor, Malaysia; Keck School of Medicine, University of Southern California, Los Angeles, CA, USA; Orion Genomics, St. Louis, MO, USA; School of Biosciences and Biotechnology, Faculty of Science and Technology, and Institute of Systems Biology, Universiti Kebangsaan Malaysia, Bangi, Selangor, Malaysia
Seqping funding source(s)
MPOB Oil Palm Genome Programme (R009611000)

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