SeqPlots specifications

Information


Unique identifier OMICS_14234
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Javascript, R
License GNU General Public License version 3.0
Computer skills Medium
Version 1.12.1
Stability Stable
Source code URL https://codeload.github.com/Przemol/seqplots/zip/v1.10.6
Maintained Yes

Download


Versioning


Add your version

Documentation


Maintainer


  • person_outline Przemyslaw Stempor <>

SeqPlots article

library_books

SeqPlots - Interactive software for exploratory data analyses, pattern discovery and visualization in genomics.

2016 Wellcome Open Res
PMID: 27918597
DOI: 10.12688/wellcomeopenres.10004.1

SeqPlots citations

 (2)
2018
PMCID: 5940187

[…] aligned to mitochondrial dna were removed. accessible regions and peaks were identified using the broad peak calling parameters of macs2. chromatin accessibility profiles were created using the seqplots package [33] from bioconductor by assessing the chromatin with atac-seq reads per million (rpm) per 10 nucleotides +/- 1kb from the gbr summit., previously we showed that chd9 and brm […]

2017
PMCID: 5799712

[…] of 0.00001 was added to avoid log10(0) during loglr calculation. chip-seq tracks were generated using the integrative genomics viewer software.42, 43 heatmaps and line plots were generated using the seqplots software (http://przemol.github.io/seqplots). the chip-seq data were deposited under gse95585., the rank ordering of super-enhancers (rose) script28, 44 was used to generate stitched […]

SeqPlots institution(s)
The Gurdon Institute and the Department of genetics, University of Cambridge, Cambridge, UK
SeqPlots funding source(s)
This work was supported by the Wellcome Trust (101863).

SeqPlots reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review SeqPlots

Related Tools