Protocols

Seqpurge specifications

Information


Unique identifier OMICS_11760
Name Seqpurge
Software type Package/Module
Interface Command line interface
Restrictions to use None
Biological technology Illumina
Operating system Unix/Linux, Windows
Programming languages C++
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Source code URL https://codeload.github.com/imgag/ngs-bits/zip/master
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Marc Sturm

Publication for Seqpurge

Seqpurge citation

call_split

Whole Genome Sequences of Two Carbapenem Resistant Klebsiella quasipneumoniae Strains Isolated from a Tertiary Hospital in Johor, Malaysia

2017
Genome Announc
PMCID: 5552988
PMID: 28798179
DOI: 10.1128/genomeA.00768-17
call_split See protocol

[…] ented with Nextera XT (Illumina, San Diego, CA). The constructed libraries were then sequenced in two MiSeq runs (2- × 150- and 2- × 250-bp run settings). Nextera adapter trimming was performed using SeqPurge and the trimmed reads were subsequently error corrected with BFC (, ). The adapter-trimmed and error-corrected paired-end reads were assembled using SPAdes version 3.10 in the careful mode () […]

Seqpurge institution(s)
Institute of Medical Genetics and Applied Genomics, University Hospital Tübingen, Tübingen, Germany

Seqpurge review

star_border star_border star_border star_border star_border
star star star star star
Johanna Nelkner's avatar image

Johanna Nelkner

star_border star_border star_border star_border star_border
star star star star star
Desktop
Easy to handle, robust results - my new favorite Adapter-trimming tool for illumina paired-end data. Illumina adapters are identified automatically, therefore no adapter files have to be given, which is very comfortable