SeqScape statistics

Tool stats & trends

Looking to identify usage trends or leading experts?

Protocols

SeqScape specifications

Information


Unique identifier OMICS_01819
Name SeqScape
Software type Package/Module
Interface Graphical user interface
Restrictions to use License purchase required
Operating system Windows
License Commercial
Computer skills Advanced
Version 3.0
Stability Stable
Maintained No

Versioning


No version available

SeqScape citations

 (808)
library_books

Case report of a novel homozygous splice site mutation in PLA2G6 gene causing infantile neuroaxonal dystrophy in a Sudanese family

2018
BMC Med Genet
PMCID: 5941609
PMID: 29739362
DOI: 10.1186/s12881-018-0592-y

[…] gation analysis we performed Sanger sequencing for the candidate variants for the two patients and five healthy family members using the BIGDYE chemistry on an ABI3730 sequencer (Applied Biosystems). Seqscape (Applied Biosystems) and Chromas lite software (Technelysium, South Brisbane, QLD, Australia) were used for sequence analysis and visualization. Genetic testing was done for the two patients […]

library_books

Identification and Functional Characterization of a Novel Mutation in the Human Calcium Sensing Receptor That Co Segregates With Autosomal Dominant Hypocalcemia

2018
PMCID: 5930847
PMID: 29743878
DOI: 10.3389/fendo.2018.00200

[…] tor, which was analyzed on an Applied Biosystems 3100 Genetic Analyzer (ABI3100), according to the manufacturers’ instructions. The nucleotide sequence identified by the ABI3100 was analyzed with the SeqScape Software ver. 2.0 (Applied Biosystems) to confirm any variations, single-nucleotide polymorphisms or mutations using the reference sequence of the CASR gene (NG_009058). […]

call_split

An unusually high frequency of SCAD deficiency caused by two pathogenic variants in the ACADS gene and its relationship to the ethnic structure in Slovakia

2018
BMC Med Genet
PMCID: 5910552
PMID: 29678161
DOI: 10.1186/s12881-018-0566-0
call_split See protocol

[…] roducts were sequenced using the ABI 3100® Avant Genetic Analyzer (Applied Biosystems) using a BigDye® Terminator v3.1 Cycle Sequencing Kit (Applied Biosystems). Mutation analysis was performed using SeqScape® Software v2.6. All identified sequence variants were confirmed by sequencing of both DNA strands. […]

call_split

Efficacy of live attenuated porcine reproductive and respiratory syndrome virus 2 strains to protect pigs from challenge with a heterologous Vietnamese PRRSV 2 field strain

2018
PMCID: 5907707
PMID: 29673363
DOI: 10.1186/s12917-018-1451-y
call_split See protocol

[…] uence raw data was created with the Data Collection Software (version 2.0, Applied Biosystems, Life Technologies). The raw sequence data was assembled and the consensus sequences were generated using SeqScape Software (version 2.5, Applied Biosystems, Life Technologies). A multiple sequence alignment was done in BioEdit [], followed by Neighbour joining tree construction (Maximum Composite substit […]

library_books

PATL2 is a key actor of oocyte maturation whose invalidation causes infertility in women and mice

2018
PMCID: 5938616
PMID: 29661911
DOI: 10.15252/emmm.201708515

[…] re of 60°C. Sequencing reactions were performed using BigDye Terminator v3.1 (Applied Biosystems). Sequence analyses were carried out on ABI 3130XL (Applied Biosystems). Sequences were analysed using seqscape software (Applied Biosystems). The primers used for Sanger verification of PATL2 mutations in patients are listed in . […]

library_books

Single cell genetic analysis validates cytopathological identification of circulating cancer cells in patients with clear cell renal cell carcinoma

2018
Oncotarget
PMCID: 5929446
PMID: 29732003
DOI: 10.18632/oncotarget.25102

[…] plied Biosystems, USA) as per manufacturer's instructions. Sequencing data were collected raw from a 3130xl Genetic Analyser (Applied Biosystems, USA) and analysed using both Sequencing Analysis® and SeqScape® softwares (Applied Biosystems, USA).All sequences were analysed by visual inspection of the individual sequencing files. Sanger sequencing of DNA extracted from whole populations predictably […]

Citations

Looking to check out a full list of citations?

SeqScape institution(s)
Thermo Fisher Scientific

SeqScape reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review SeqScape