SeqSite specifications


Unique identifier OMICS_00493
Name SeqSite
Alternative name ChIP-Seq Binding Site Identification
Software type Package/Module
Interface Command line interface
Restrictions to use Academic or non-commercial use
Input data Some ChIP-seq data.
Input format BED
Output data A file that archives all detected binding regions, with statistical significance levels and a file that archives all identified binding sites with the normalized scores indicating binding affinity.
Output format BED+BAR
Operating system Unix/Linux, Windows
Programming languages C, C++
Computer skills Advanced
Version 1.1.2
Stability Stable
Source code URL
Maintained Yes


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  • person_outline Xuegong Zhang <>
  • person_outline faxi wang <>

Publication for ChIP-Seq Binding Site Identification

SeqSite institution(s)
MOE Key Laboratory of Bioinformatics and Bioinformatics Division, TNLIST / Department of Automation, Tsinghua University, Beijing, China
SeqSite funding source(s)
Partially supported by the National Basic Research Program of China (2012CB316504) and NSFC grants (Nos. 30625012, 60721003 and 60928007).

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