SeqTrimMap specifications

Information


Unique identifier OMICS_16421
Name SeqTrimMap
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data The reads data, a reference genome, the sequences to filter out.
Input format FASTA
Output data The aligned sequences in "bowtie" and SAM format.
Biological technology Illumina
Operating system Unix/Linux
Programming languages Shell (Bash)
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Requirements Bowtie
Source code URL http://sgjlab.org/wp-content/uploads/2014/10/SeqTrimMap_v1.0.tar.gz
Maintained Yes

Versioning


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Maintainer


  • person_outline Antonio Marco <>

Publication for SeqTrimMap

SeqTrimMap institution(s)
Faculty of Life Sciences, University of Manchester, Manchester, UK
SeqTrimMap funding source(s)
This work was supported by the Biotechnology and Biological Sciences Research Council (BB/G011346/1) and the University of Manchester (fellowship).

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