Protein sequence comparison analysis | Proteomics

Protein comparison analysis steps

Protein sequence comparison analysis | Proteomics

Most Recent Tools

Desktop app
Web app
pHMM-tree pHMM-tree

pHMM-tree

Builds a phylogeny of protein families using the distance matrix of their…

Builds a phylogeny of protein families using the distance matrix of their poisson Hidden Markov Models (pHMMs). Although not designed for subfamily classification, if given a set of protein…

Uniclust Uniclust

Uniclust

Analyses protein sequence, predicts function and searches sequence. Uniclust…

Analyses protein sequence, predicts function and searches sequence. Uniclust databases cluster UniProtKB sequences at the level of 90%, 50% and 30% pairwise sequence identity. The sequences in the…

Desktop app
MetaDomain MetaDomain

MetaDomain

Provides a protein domain classification for short reads generated by…

Provides a protein domain classification for short reads generated by next-generation sequencing technologies. MetaDomain uses relaxed position-specific score thresholds to align more reads to a…

Desktop app
Amplitude Spectrum… Amplitude Spectrum Distance

ASD Amplitude Spectrum Distance

Compares protein fragments based on the discrete Fourier transform of their Cα…

Compares protein fragments based on the discrete Fourier transform of their Cα distance matrix. ASD can be computed efficiently and provides a parameter-free measure of the global shape…

Most Popular Tools

TnT TnT

TnT

A set of libraries aimed at creating powerful tree- and track-based…

A set of libraries aimed at creating powerful tree- and track-based visualisations for the web. Its modularity and rich API facilitate the development of many different visualisations ranging from…

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