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SeqAnt | A web service to identify and annotate DNA sequence variations

Simplifies variant annotation and filtering. SeqAnt can annotate sequencing experiments on the scale of thousands of whole-genome samples and tens of millions of variants in a web browser, while also integrating the first natural-language search engine that enables filtering using English phrases. The software allows to find alleles of interest without significant computer science training, improves reproducibility, and reduces annotation and filtering costs for large experiments.

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SeqAnt classification

  • Animals
    • Homo sapiens

SeqAnt specifications

Unique identifier:
OMICS_00182
Alternative name:
Sequence Annotator(SeqAnt)
Restrictions to use:
None
License:
GNU General Public License version 2.0
Version:
2.0
Registration required:
Yes
Name:
Sequence Annotator
Interface:
Web user interface
Programming languages:
Javascript, Perl, PHP
Computer skills:
Basic
Stability:
Beta
Maintained:
Yes

Subtools

  • bystro

SeqAnt support

Maintainers

  • Thomas Wingo <>
  • Alex Kotlar <>

Additional information

Guide: https://seqant.emory.edu/help https://github.com/akotlar/bystro

Credits

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Publications

Institution(s)

Department of Human Genetics, Emory University School of Medicine, Atlanta, GA, USA; Division of Neurology, Atlanta VA Medical Center, Atlanta, GA, USA; Department of Neurology, Emory University School of Medicine, Atlanta, GA, USA

Funding source(s)

Supported by the Molecules to Mankind program (a project of the Burroughs Wellcome Fund and the Laney Graduate School at Emory University), Veterans Health Administration (BX001820), National Institutes of Health (AG025688) and Amazon AWS Educate grants.

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.